Glutamate Receptor, Ionotropic Kainate 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  GLY-202   LEU-203  35.9 31.3 -85.6 -17.2 145.2 42.2 -46.3  LEU-203   ILE-204  34.5 31.7 -34.5 -22.0 142.0 72.1 -8.4  ILE-204   ASP-205  35.1 35.4 -174.3 0.3 138.6 44.4 -15.6  ASP-205   SER-206  34.3 37.6 -40.8 60.3 64.0 93.6 -25.1  SER-206   LYS-207  33.8 41.3 17.6 28.1 42.4 155.7 -7.0  LYS-207   GLY-208  31.2 43.5 -13.2 63.0 65.9 100.1 -62.3  GLY-208   TYR-209  28.7 47.2 -178.3 28.1 100.2 117.6 19.6  TYR-209   GLY-210  25.2 47.6 165.2 -48.1 63.4 18.7 102.9  GLY-210   ILE-211  24.7 45.7 46.2 -27.6 80.1 87.8 4.9  ILE-211   GLY-212  22.2 42.2 5.7 -55.9 14.1 92.6 -32.0  GLY-212   THR-213  20.6 39.9 -5.1 50.2 123.3 91.3 28.3  THR-213   PRO-214  20.3 36.3 -27.5 -57.5 153.0 34.2 -22.2  PRO-214   MET-215  19.1 34.3 -158.1 -114.6 114.7 90.9 -156.7  MET-215   GLY-216  21.9 30.8 54.3 124.6 64.1 22.7 122.7  GLY-216   SER-217  23.9 28.2 144.3 -64.4 120.3 100.1 -28.0  SER-217   PRO-218  23.0 24.8 9.7 -57.7 96.3 53.1 -30.2  PRO-218   TYR-219  25.5 21.7 159.9 36.5 163.2 97.1 125.0  TYR-219   ARG-220  25.3 18.1 -10.1 -18.9 63.8 44.8 31.0  ARG-220   ASP-221  26.0 17.0 -15.0 -20.8 74.4 27.5 20.2 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees