Abc Transporter, Substrate Binding Protein (Agrocinopines A And B)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-276   THR-277  15.3 15.3 5.9 -0.9 44.1 42.7 13.4
 THR-277   ARG-278  12.2 12.2 7.9 -1.6 54.7 55.5 -3.9
 ARG-278   GLY-279  11.5 11.4 -1.8 15.9 122.5 119.6 63.8
 GLY-279   THR-280  8.0 7.8 4.5 -5.4 61.4 52.2 -8.9
 THR-280   LEU-281  5.9 5.9 1.5 -0.5 67.0 70.9 -17.4
 LEU-281   ILE-282  2.7 2.8 8.5 1.5 18.4 24.8 60.8
 ILE-282   GLU-283  2.6 2.5 -4.0 -0.7 127.6 128.2 -32.1
 GLU-283   ASN-284  1.1 0.9 13.5 -8.1 71.5 74.0 -2.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-491   PRO-492  3.8 4.0 -3.8 -1.5 140.3 136.5 -61.1
 PRO-492   TYR-493  3.7 3.3 11.6 -18.3 75.7 77.7 40.9
 TYR-493   ASP-494  2.5 2.2 5.4 -5.0 95.1 89.3 39.0
 ASP-494   VAL-495  6.1 5.9 26.8 -19.5 47.3 46.0 6.3
 VAL-495   TYR-496  8.5 8.4 4.9 -2.5 101.3 103.8 -1.3
 TYR-496   ALA-497  12.1 12.1 0.9 -1.0 27.7 29.3 4.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees