Udp-N-Acetylglucosamine--N-Acetylmuramyl-(pentapeptide) Pyrophosphoryl-Undecaprenol N-Acetylglucosamine Transferase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-159   GLY-160  4.9 4.8 9.2 -7.0 131.3 128.7 -12.9
 GLY-160   ASN-161  3.3 3.0 13.1 -21.4 71.3 71.3 6.9
 ASN-161   PRO-162  3.8 3.3 11.0 3.2 75.1 80.9 34.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-265   THR-266  7.5 7.0 12.7 -13.1 36.8 38.1 -8.0
 THR-266   VAL-267  7.2 6.8 -0.2 -3.5 98.8 105.5 25.4
 VAL-267   SER-268  4.2 3.8 11.0 -6.0 126.9 127.6 -20.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-269   ILE-270  5.0 4.7 4.4 -5.5 140.0 142.8 20.9
 ILE-270   ALA-271  3.7 3.5 1.0 -2.5 74.5 79.0 0.9
 ALA-271   ALA-272  2.4 2.6 11.1 -6.5 60.7 61.6 -1.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-341   ALA-342  4.6 4.6 10.4 0.2 109.4 108.2 -31.8
 ALA-342   THR-343  0.8 0.8 1.5 -8.1 143.5 142.4 48.6
 THR-343   GLU-344  3.3 3.2 -1.3 11.3 27.0 29.6 -65.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees