Apolipoprotein E

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-36   LEU-37  4.5 5.0 4.6 -9.4 111.3 111.2 18.3
 LEU-37   ARG-38  3.0 3.5 8.7 -4.9 100.8 104.4 -42.5
 ARG-38   TRP-39  6.6 7.0 -4.2 6.8 143.3 143.5 23.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-54   GLN-55  5.7 5.7 22.3 5.0 77.3 70.9 56.1
 GLN-55   VAL-56  1.9 1.9 -0.4 0.9 168.5 167.8 -18.8
 VAL-56   THR-57  2.0 1.9 0.7 -2.8 59.2 61.4 13.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-113   ARG-114  10.8 10.3 -8.1 5.0 91.6 90.3 -4.7
 ARG-114   LEU-115  10.5 10.4 5.3 0.5 30.3 34.1 19.8
 LEU-115   VAL-116  8.6 8.6 -4.0 10.0 140.7 141.1 62.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-146   ARG-147  4.0 3.7 -7.5 3.0 104.8 105.7 -14.1
 ARG-147   LEU-148  3.8 4.0 -5.6 1.2 74.0 70.4 12.7
 LEU-148   LEU-149  2.0 2.7 4.1 -14.4 49.6 59.0 -81.4
 LEU-149   ARG-150  1.5 1.6 14.2 6.0 36.1 22.5 145.2
 ARG-150   ASP-151  1.9 1.7 -2.3 -4.0 79.5 87.3 64.3
 ASP-151   ALA-152  5.2 5.2 4.2 5.5 102.4 105.9 -50.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees