Serotransferrin

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-86   SER-87  3.9 3.7 18.1 -8.9 19.3 9.8 16.3
 SER-87   LYS-88  2.7 1.9 1.8 -21.5 78.0 83.8 -13.8
 LYS-88   GLU-89  1.7 1.6 45.6 -27.7 73.8 69.8 3.9
 GLU-89   ASP-90  2.1 3.3 -9.8 -8.0 39.9 42.7 25.0
 ASP-90   PRO-91  3.6 4.9 -15.5 12.5 36.5 43.9 5.7
 PRO-91   GLN-92  2.0 2.3 11.1 -7.3 152.2 160.0 -10.0
 GLN-92   THR-93  2.0 2.1 13.6 -20.5 130.4 122.5 9.8
 THR-93   PHE-94  2.9 3.0 -50.7 24.3 24.5 16.7 37.6
 PHE-94   TYR-95  1.4 2.7 8.0 4.3 79.4 84.2 10.4
 TYR-95   TYR-96  3.6 4.2 -11.8 -0.7 40.0 37.6 20.3
 TYR-96   ALA-97  6.7 7.1 0.3 5.0 129.5 127.8 -9.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-243   ALA-244  10.2 10.3 0.0 7.5 83.6 82.6 1.5
 ALA-244   GLN-245  7.6 7.7 -5.4 -3.2 34.1 25.7 10.1
 GLN-245   VAL-246  5.5 6.2 0.9 0.1 66.0 78.3 -3.0
 VAL-246   PRO-247  1.8 2.6 -35.4 -12.8 42.6 35.8 58.2
 PRO-247   SER-248  2.5 3.5 -18.9 1.3 68.7 91.7 -4.3
 SER-248   HIS-249  3.4 3.4 139.7 -73.7 65.1 81.5 34.4
 HIS-249   THR-250  6.8 7.1 -31.9 21.3 62.1 78.2 16.8
 THR-250   VAL-251  9.8 9.4 -21.0 -3.0 103.4 94.9 -11.5
 VAL-251   VAL-252  13.5 13.1 -7.8 2.7 125.0 124.1 -1.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees