D-3-Phosphoglycerate Dehydrogenase (Phosphoglycerate 3 Dehydrogenase) (E.C.1.1.1.95)

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASN-103   ALA-104  3.1 3.2 -8.8 -2.4 139.6 139.2 -70.5
 ALA-104   PRO-105  4.7 4.7 -4.1 -17.0 96.0 107.1 -35.8
 PRO-105   PHE-106  7.7 7.4 -20.8 52.6 147.3 160.4 255.5
 PHE-106   SER-107  9.0 9.5 -15.3 -3.0 139.3 131.1 -107.0
 SER-107   ASN-108  6.2 6.6 -10.3 9.6 154.0 155.2 3.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLN-298   GLU-299  2.7 2.4 5.7 -11.2 70.4 71.7 -68.3
 GLU-299   ALA-300  3.3 3.3 13.7 1.3 21.4 23.4 140.7
 ALA-300   GLN-301  2.4 2.4 -12.1 12.3 132.6 132.1 7.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees