Mta/sah Nucleosidase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-43   ALA-44  13.2 13.1 2.4 0.5 174.1 169.9 -40.4
 ALA-44   LEU-45  11.7 11.5 3.9 -1.3 87.1 87.4 51.9
 LEU-45   LEU-46  11.5 11.6 17.1 -38.1 157.1 150.8 194.0
 LEU-46   LYS-47  10.0 10.4 7.2 8.3 90.8 77.0 -50.4
 LYS-47   SER-48  11.9 11.8 19.3 11.5 132.6 118.2 -262.5
 SER-48   GLY-49  9.5 9.9 176.0 179.3 131.1 131.4 11.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-58   ALA-59  4.6 4.9 0.9 2.4 133.6 134.0 -18.4
 ALA-59   THR-60  2.1 2.5 -3.3 3.6 114.4 112.2 15.0
 THR-60   LEU-61  1.6 1.5 0.2 -1.8 73.4 73.3 24.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-67   PRO-68  9.8 10.2 6.9 -8.0 19.2 17.4 17.7
 PRO-68   ASP-69  8.7 8.9 -0.7 -3.8 127.5 127.9 -71.0
 ASP-69   VAL-70  8.6 9.0 3.9 -2.7 70.3 68.7 -3.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PHE-119   LYS-120  10.2 10.0 -0.5 -2.4 28.1 26.5 33.1
 LYS-120   ALA-121  8.9 8.7 -2.9 0.2 87.5 86.8 33.5
 ALA-121   ASP-122  5.3 5.2 0.7 -0.5 130.4 132.9 20.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 CYS-132   ILE-133  9.5 9.5 -3.5 -0.8 101.8 90.2 -15.0
 ILE-133   ALA-134  10.8 11.2 0.4 2.9 16.4 23.5 30.5
 ALA-134   GLU-135  10.6 11.4 -6.6 13.2 102.3 106.9 21.7

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-192   ARG-193  9.1 9.0 46.8 -31.7 62.2 58.4 105.6
 ARG-193   ALA-194  12.6 12.7 -48.4 44.9 48.6 52.2 61.7
 ALA-194   ILE-195  16.1 15.9 -20.9 -2.3 115.0 108.4 -90.5
 ILE-195   SER-196  19.1 18.7 -17.1 27.4 113.3 103.6 117.8
 SER-196   ASP-197  21.8 21.5 -6.1 2.0 93.8 83.3 70.9
 ASP-197   VAL-198  23.9 24.0 -19.4 -5.5 67.7 72.9 97.5
 VAL-198   ALA-199  24.4 24.6 111.4 -109.3 45.1 65.7 -10.0
 ALA-199   ASP-200  24.5 26.4 107.6 174.3 82.1 120.4 67.4
 ASP-200   GLN-201  28.3 30.2 174.0 -56.9 42.0 125.2 148.4
 SER-206   PHE-207  27.9 29.1 -175.3 -1.7 110.6 96.6 771.0
 PHE-207   ASP-208  24.9 25.7 8.2 -9.0 70.4 89.7 -24.5
 ASP-208   GLU-209  27.1 26.3 -8.3 26.2 45.2 27.3 -137.6
 GLU-209   PHE-210  28.5 27.7 -7.6 47.5 47.6 54.7 -273.8
 PHE-210   LEU-211  25.5 24.6 -52.2 -1.2 109.0 106.3 -192.7
 LEU-211   ALA-212  22.6 22.5 -1.5 2.8 69.0 71.0 0.1
 ALA-212   VAL-213  23.5 24.7 10.6 -26.3 162.7 157.1 164.4
 VAL-213   ALA-214  23.0 23.4 -6.4 -1.4 84.2 85.9 78.9
 ALA-214   ALA-215  19.7 19.8 5.2 -1.2 74.7 61.2 86.6
 ALA-215   LYS-216  18.6 18.9 3.0 -3.8 133.2 121.0 -8.4
 LYS-216   GLN-217  20.1 20.3 3.3 3.7 138.0 139.6 -62.9
 GLN-217   SER-218  18.0 18.2 -5.3 9.9 105.1 108.5 53.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees