DNA Topoisomerase III
(All numbering and residues are taken from first PDB file)
Bending Residue Dihedral Analysis
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
SER-194
VAL-195
10.2
9.5
30.7
-24.7
73.3
59.2
6.7
VAL-195
GLY-196
6.6
6.5
-21.9
-18.3
33.5
41.3
144.7
GLY-196
ARG-197
3.6
3.2
11.0
-5.7
71.6
66.3
19.1
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ALA-504
ARG-505
14.2
13.7
20.4
-16.1
169.4
169.9
-35.0
ARG-505
PHE-506
14.2
14.2
26.8
-20.0
111.8
123.9
-27.8
PHE-506
VAL-507
10.3
10.7
14.5
-47.4
79.5
83.6
-38.7
VAL-507
GLN-508
10.7
11.5
-0.6
1.0
32.7
59.3
-2.4
GLN-508
ASP-509
10.5
13.9
-16.5
34.1
85.6
123.5
36.1
ASP-509
LYS-510
13.9
16.0
-15.7
6.1
89.8
117.7
-15.7
LYS-510
ASP-511
17.1
18.9
-0.9
-3.6
143.1
173.4
-24.0
ASP-511
LEU-512
19.0
19.1
15.0
-12.1
39.0
62.0
25.6
LEU-512
LYS-513
16.4
15.4
5.7
3.4
96.5
91.7
-17.3
LYS-513
LYS-514
16.6
16.2
-8.6
0.2
99.9
141.0
-20.6
LYS-514
ILE-515
20.4
18.7
7.9
16.0
13.2
28.8
121.1
ILE-515
LEU-516
20.4
16.5
-20.9
6.3
120.9
91.8
-58.0
LEU-516
ARG-517
17.7
14.0
-165.7
0.2
88.3
97.0
-11.5
ARG-517
ALA-518
19.7
17.0
153.0
-4.9
114.1
19.9
351.0
ALA-518
THR-519
19.8
18.1
7.0
-8.0
58.5
48.3
6.2
THR-519
ASP-520
18.5
14.7
17.4
130.5
68.6
102.1
-37.9
ASP-520
GLY-521
15.4
14.7
-97.5
-149.0
64.7
54.6
-317.1
GLY-521
LEU-522
12.2
12.0
21.7
4.1
67.9
67.9
62.6
LEU-522
GLY-523
8.6
8.5
-179.9
149.2
151.7
132.4
-113.3
GLY-523
THR-524
8.7
8.0
-33.3
19.9
142.4
119.6
26.2
THR-524
GLU-525
10.5
10.9
29.3
-36.3
83.0
90.0
-21.9
GLU-525
ALA-526
13.7
14.0
39.3
-20.0
80.3
61.7
31.2
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees
Residue
iResidue
i+1Distance of hinge axis to residue i in
(A) Distance of hinge axis to residue i in
(A) Change in
(deg) Change in
(deg) Angle of psi(i) axis to hinge axis
(deg) Angle of psi(i) axis to hinge axis
(deg) Percentage Progress
ARG-567
PRO-568
4.1
4.3
9.1
-15.6
32.8
25.3
-23.8
PRO-568
ASP-569
6.0
6.2
24.3
-12.0
70.4
71.8
31.9
ASP-569
MET-570
9.2
9.1
12.2
0.6
27.5
25.6
56.7
Graph shows rotational transition at bending residues and can be used
to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees