Putative D-Lactate Dehydrogenase

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  LYS-9   PRO-10  4.9 5.2 -1.3 1.1 73.4 71.1 -113.0  PRO-10   TYR-11  4.9 5.0 -1.5 6.7 95.6 94.4 -8.1  TYR-11   TRP-12  2.0 1.9 -3.8 6.1 162.7 160.9 57.7  TRP-12   VAL-13  1.9 1.8 -5.7 -2.9 102.6 103.8 -60.5 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  PRO-97   ALA-98  14.6 14.6 6.0 0.6 152.8 151.8 -116.2  ALA-98   TYR-99  15.9 15.8 -64.5 1.3 43.2 44.5 623.2  TYR-99   SER-100  14.4 13.8 -1.8 1.7 58.2 45.2 -73.6  SER-100   PRO-101  15.9 15.9 -7.9 -2.8 60.1 73.9 20.4  PRO-101   ASN-102  18.9 17.9 2.1 11.5 170.1 167.8 -166.4  ASN-102   ALA-103  18.7 18.6 17.9 -3.1 112.6 117.5 -104.9  ALA-103   VAL-104  15.1 15.0 3.4 2.1 96.1 97.1 -63.1 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees

Residue i Residue i+1 Distance of hinge axis to residue i in conformer 1 (A) Distance of hinge axis to residue i in conformer 2 (A) Change in psi (i) (deg) Change in phi (i+1) (deg) Angle of psi(i) axis to hinge axis conformer 1 (deg) Angle of psi(i) axis to hinge axis conformer 2 (deg) Percentage Progress  THR-301   LYS-302  9.5 9.4 4.0 -7.6 121.7 120.1 66.8  LYS-302   GLU-303  9.8 9.5 13.1 -8.1 144.0 145.0 -43.4  GLU-303   ALA-304  12.7 12.4 -0.6 3.5 42.9 40.4 -71.8  ALA-304   ILE-305  11.5 11.0 5.2 -6.9 121.4 116.1 47.8  ILE-305   SER-306  7.9 7.4 -11.5 10.6 57.7 60.5 -26.0  SER-306   CYS-307  9.8 9.5 -11.2 9.7 28.9 29.0 24.6  CYS-307   ILE-308  11.5 11.2 -3.2 -2.6 53.3 51.7 66.4  ILE-308   CYS-309  8.6 8.2 -3.7 7.6 59.8 60.8 -41.7  CYS-309   GLY-310  6.6 6.4 -13.4 8.4 50.4 52.5 59.4 Graph shows rotational transition at bending residues and can be used to identify hinge bending residues. Probably only informative for interdomain rotations greater than 20 degrees