Capsid Protein

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-1077   ASP-1078  10.5 10.3 2.1 -6.4 132.8 134.5 44.7
 ASP-1078   VAL-1079  11.0 11.0 1.1 2.1 95.8 98.9 -9.7
 VAL-1079   LEU-1080  9.4 9.4 14.8 -17.4 166.7 163.6 24.2

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-1109   ARG-1110  11.4 11.3 -7.6 8.6 66.0 65.8 27.0
 ARG-1110   ILE-1111  14.9 14.8 -1.4 7.7 55.0 49.6 14.0
 VAL-1109   ARG-1110  2.1 3.3 -7.6 8.6 83.4 81.0 12.3
 ARG-1110   ILE-1111  5.6 6.4 -1.4 7.7 82.1 78.2 45.4
 ILE-1111   MET-1112  7.8 8.1 -4.8 -4.6 94.5 99.4 27.2
 VAL-1109   ARG-1110  10.8 11.0 -7.6 8.6 101.1 104.9 3.7
 ARG-1110   ILE-1111  9.1 9.0 -1.4 7.7 116.5 110.4 128.7
 ILE-1111   MET-1112  5.4 5.3 -4.8 -4.6 116.9 120.8 -6.8
 VAL-1109   ARG-1110  11.4 11.3 -7.6 8.6 66.0 65.8 27.0
 ARG-1110   ILE-1111  14.9 14.8 -1.4 7.7 55.0 49.6 14.0
 VAL-1109   ARG-1110  2.1 3.3 -7.6 8.6 83.4 81.0 12.3
 ARG-1110   ILE-1111  5.6 6.4 -1.4 7.7 82.1 78.2 45.4
 ILE-1111   MET-1112  7.8 8.1 -4.8 -4.6 94.5 99.4 27.2
 VAL-1109   ARG-1110  10.8 11.0 -7.6 8.6 101.1 104.9 3.7
 ARG-1110   ILE-1111  9.1 9.0 -1.4 7.7 116.5 110.4 128.7
 ILE-1111   MET-1112  5.4 5.3 -4.8 -4.6 116.9 120.8 -6.8
 VAL-1109   ARG-1110  11.4 11.3 -7.6 8.6 66.0 65.8 27.0
 ARG-1110   ILE-1111  14.9 14.8 -1.4 7.7 55.0 49.6 14.0
 VAL-1109   ARG-1110  2.1 3.3 -7.6 8.6 83.4 81.0 12.3
 ARG-1110   ILE-1111  5.6 6.4 -1.4 7.7 82.1 78.2 45.4
 ILE-1111   MET-1112  7.8 8.1 -4.8 -4.6 94.5 99.4 27.2
 VAL-1109   ARG-1110  10.8 11.0 -7.6 8.6 101.1 104.9 3.7
 ARG-1110   ILE-1111  9.1 9.0 -1.4 7.7 116.5 110.4 128.7
 ILE-1111   MET-1112  5.4 5.3 -4.8 -4.6 116.9 120.8 -6.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-1123   ILE-1124  3.9 3.8 2.9 -16.0 42.7 38.7 -100.7
 ILE-1124   VAL-1125  1.4 1.3 -1.4 6.4 72.6 82.5 36.9
 VAL-1125   SER-1126  2.5 2.5 8.4 6.5 28.7 23.9 131.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ILE-1149   ALA-1150  4.5 4.4 -26.7 29.3 137.7 134.4 40.7
 ALA-1150   ASP-1151  6.2 6.1 0.0 -4.7 66.1 66.3 -40.8
 ASP-1151   VAL-1152  8.6 8.6 2.8 9.2 18.5 12.2 150.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 PRO-1157   ILE-1158  8.8 9.0 -21.9 25.7 172.9 170.6 39.7
 ILE-1158   GLU-1159  8.0 8.0 -20.1 17.0 97.8 99.6 2.7
 GLU-1159   VAL-1160  10.1 10.3 -3.6 7.0 155.5 160.1 32.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-1183   CYS-1184  8.2 8.0 5.0 -11.5 118.4 115.5 34.4
 VAL-1183   CYS-1184  7.4 7.5 5.0 -11.5 78.9 79.4 21.2
 CYS-1184   MET-1185  4.5 4.7 4.8 -6.8 93.5 89.5 11.1
 VAL-1183   CYS-1184  8.2 8.0 5.0 -11.5 118.4 115.5 34.4
 VAL-1183   CYS-1184  7.4 7.5 5.0 -11.5 78.9 79.4 21.2
 CYS-1184   MET-1185  4.5 4.7 4.8 -6.8 93.5 89.5 11.1
 MET-1185   LEU-1186  5.6 5.7 1.7 4.9 77.7 79.0 29.4

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees