Saccharopine Dehydrogenase, Nad+, L-Lysine- Forming

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-132   ALA-133  5.2 5.2 6.2 0.6 8.2 12.8 35.0
 ALA-133   ALA-134  3.4 3.3 -7.3 6.3 100.7 104.5 -13.1
 ALA-134   PHE-135  3.2 3.1 31.9 -23.8 9.3 8.2 58.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 TYR-169   PRO-170  2.8 2.7 14.9 -1.3 72.6 71.7 47.3
 PRO-170   ASN-171  3.1 3.2 -8.2 -0.1 109.4 114.4 -28.3
 ASN-171   GLU-172  2.8 3.0 1.0 -1.4 96.4 97.7 -33.9
 GLU-172   LYS-173  4.5 4.7 -5.0 1.4 19.7 21.7 32.8
 LYS-173   ALA-174  5.6 6.1 0.7 -1.1 119.5 125.0 -7.5
 ALA-174   LEU-175  2.4 2.8 5.1 -9.2 71.7 78.3 -4.0
 LEU-175   VAL-176  4.6 4.7 7.0 0.3 115.0 110.1 -15.5
 VAL-176   LYS-177  7.6 7.9 1.2 -3.2 168.9 171.7 8.9
 LYS-177   ASP-178  6.6 7.0 5.7 -5.0 98.6 104.8 -22.1
 ASP-178   VAL-179  7.0 7.1 1.1 6.8 77.2 77.3 -10.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-325   PRO-326  2.0 1.7 0.0 5.0 129.9 133.7 44.9
 PRO-326   ARG-327  2.9 2.8 4.7 -3.2 82.5 82.9 4.7
 ARG-327   GLU-328  4.0 3.9 4.2 -7.4 56.7 56.2 -5.1

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees