S-Adenosylmethionine Synthetase Isoform Type-1

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-106   LEU-107  25.1 25.5 -23.3 25.1 125.8 131.8 -61.1
 LEU-107   VAL-108  25.2 25.8 -21.1 28.4 94.3 96.6 -1.7
 VAL-108   ALA-109  22.4 22.6 -5.9 10.7 105.9 112.9 -29.4
 ALA-109   LEU-110  22.7 22.8 -33.8 32.0 90.6 94.9 45.5
 LEU-110   GLU-111  19.3 19.2 8.8 14.8 38.8 26.0 203.7
 GLU-111   GLN-112  19.1 18.5 -45.7 -52.3 92.3 102.4 -136.7
 GLN-112   GLN-113  16.9 15.1 -41.0 -28.6 40.1 144.7 -128.0
 GLN-113   SER-114  16.4 14.0 65.8 -88.0 70.0 65.9 -255.8
 SER-114   PRO-115  19.7 10.7 -179.6 -32.6 119.3 87.6 453.6
 GLU-128   ASP-129  14.3 14.2 -7.4 -2.0 64.3 58.5 30.6
 ASP-129   VAL-130  16.4 16.8 9.0 8.9 82.7 79.1 53.5
 VAL-130   GLY-131  14.1 15.1 149.3 -160.6 145.4 119.8 15.4
 GLY-131   ALA-132  16.0 16.6 -34.2 -1.0 53.2 67.6 21.5
 ALA-132   GLY-133  14.8 15.5 -4.8 -16.9 114.1 104.6 -117.0
 GLY-133   ASP-134  14.1 16.0 147.2 -127.9 118.5 153.1 -166.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 MET-150   PRO-151  3.7 3.8 -8.8 13.7 156.7 155.1 46.2
 PRO-151   LEU-152  2.8 2.9 -3.8 2.9 94.5 95.8 36.2
 LEU-152   THR-153  6.3 6.4 -6.1 6.2 84.4 81.4 -116.9

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-186   GLN-187  7.8 8.1 -1.7 1.1 39.8 45.6 -73.6
 GLN-187   TYR-188  6.1 6.2 9.9 -3.5 80.4 81.8 76.7
 TYR-188   MET-189  2.8 2.7 29.3 -51.6 143.3 143.6 144.3
 MET-189   GLN-190  2.4 1.8 -38.8 52.2 128.3 122.0 86.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-194   VAL-195  7.3 7.2 -9.5 165.3 119.0 80.3 30.5
 VAL-195   ILE-196  3.9 3.8 -52.5 17.3 86.4 93.5 -128.3
 ILE-196   PRO-197  5.4 5.0 2.8 -5.8 74.8 77.3 7.2
 PRO-197   VAL-198  6.0 5.6 4.6 0.0 38.7 41.7 47.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 VAL-251   ILE-252  32.4 32.3 -24.6 -8.7 142.7 154.8 -339.1
 ILE-252   GLY-253  31.7 32.7 -110.5 114.2 84.4 87.2 22.2
 GLY-253   GLY-254  28.0 29.8 95.6 -11.3 21.9 28.0 821.6
 GLY-254   PRO-255  25.6 27.6 -24.7 -21.8 103.6 95.3 -79.2
 PRO-255   GLN-256  26.2 25.5 124.9 -76.0 104.2 73.0 101.7
 GLN-256   GLY-257  29.9 27.6 -19.2 109.9 22.9 55.5 -795.8
 GLY-257   ASP-258  29.0 26.5 59.2 -126.6 95.9 72.0 -372.1
 ASP-258   ALA-259  26.5 28.9 -146.2 -126.0 152.8 142.7 903.1
 ALA-259   GLY-260  25.6 26.0 5.8 -0.7 95.3 99.0 -45.0
 GLY-260   VAL-261  22.0 22.4 -14.8 4.8 130.1 126.0 -104.9
 VAL-261   THR-262  19.8 20.1 13.8 -25.1 91.9 89.8 -10.3
 THR-262   GLY-263  16.1 16.5 5.9 1.9 125.5 120.3 -83.8
 GLY-263   ARG-264  14.2 14.6 -16.8 8.5 30.6 24.1 76.6

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ALA-281   PHE-282  11.4 11.3 6.9 -9.2 51.7 43.3 5.8
 PHE-282   SER-283  8.1 8.4 -5.5 12.1 143.6 141.1 34.6
 SER-283   GLY-284  9.6 9.9 -6.9 8.3 141.4 138.6 -16.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLY-358   VAL-359  11.4 11.0 -25.7 27.7 102.2 106.1 116.9
 VAL-359   ILE-360  12.2 12.1 6.7 -11.7 55.5 53.4 23.7
 ILE-360   VAL-361  9.4 9.2 -7.8 -4.8 54.6 57.7 125.5
 VAL-361   ARG-362  6.9 6.5 1.1 4.4 106.0 115.4 -104.0
 ARG-362   ASP-363  9.4 8.9 4.2 -8.7 39.0 49.0 -51.0
 ASP-363   LEU-364  10.3 10.3 5.7 14.8 71.8 64.3 111.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 ASP-365   LEU-366  6.0 6.4 5.0 1.2 86.1 92.6 16.7
 LEU-366   LYS-367  2.5 2.7 3.7 -7.5 37.2 36.0 58.1
 LYS-367   LYS-368  1.3 1.8 1.7 -6.7 87.4 86.8 -70.1
 LYS-368   PRO-369  4.2 4.6 5.8 0.9 71.6 68.7 51.0
 LYS-368   PRO-369  4.2 4.6 5.8 0.9 71.6 68.7 51.0

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LYS-368   PRO-369  4.2 4.6 5.8 0.9 71.6 68.7 51.0
 LYS-368   PRO-369  4.2 4.6 5.8 0.9 71.6 68.7 51.0
 PRO-369   ILE-370  5.9 6.3 6.6 2.5 37.0 31.3 83.9
 ILE-370   TYR-371  7.0 6.9 -14.7 16.9 130.3 124.4 -47.8

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 GLU-384   PHE-385  10.5 10.6 15.4 -17.7 63.4 55.1 27.0
 PHE-385   PRO-386  6.9 7.1 -4.9 10.9 85.6 88.9 -23.5
 PRO-386   TRP-387  7.6 7.5 -11.4 4.1 44.1 41.7 55.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees