Glutamate Receptor 2

(All numbering and residues are taken from first PDB file)

Bending Residue Dihedral Analysis

Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 SER-497   LEU-498  2.9 3.4 4.2 -6.6 46.2 48.7 -11.5
 LEU-498   GLY-499  0.8 0.4 11.3 -36.2 123.3 123.2 70.2
 GLY-499   ILE-500  4.3 4.0 11.3 -2.1 45.2 48.8 13.3

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees


Residue
i
Residue
i+1
Distance of hinge axis to residue i in conformer 1
(A)
Distance of hinge axis to residue i in conformer 2
(A)
Change in psi (i)
(deg)
Change in phi (i+1)
(deg)
Angle of psi(i) axis to hinge axis conformer 1
(deg)
Angle of psi(i) axis to hinge axis conformer 2
(deg)
Percentage Progress
 LEU-727   ASP-728  10.1 9.6 4.9 -3.5 32.1 38.0 9.4
 ASP-728   SER-729  7.2 6.6 -2.3 9.6 79.2 78.8 -4.3
 SER-729   LYS-730  3.5 2.8 -1.3 26.3 110.2 96.7 51.5
 LYS-730   GLY-731  2.4 2.5 -13.6 -10.4 57.7 70.0 33.3
 GLY-731   TYR-732  4.3 4.2 -9.6 -6.9 73.4 72.5 -1.5

Downloading Image

Graph shows rotational transition at bending residues and can be used to identify hinge bending residues.
Probably only informative for interdomain rotations greater than 20 degrees