Alpha-1 Catenin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-1 Catenin
  Conformer 1
(PDB)
1h6g (A)
  Conformer 2
(PDB)
1l7c (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 112 1.81   509 - 628
2 112 0.97   395 - 508

Sequence


           ________________________________________________________________________________________________________________________ 
 1h6g(A) : DLRRQLRKAVXdHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRsASQLEALCPQVINAALALAAKPQSKLAQENdLFKEQWEKQVRVL 
         :                                                                                                                          
 1l7c(C) : ****************SFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRsASQLEALCPQVINAALALAAKPQSKLAQENdLFKEQWEKQVRVL 
           ________________________________________________________________________________________________________________________ 

           _______508______________________________________________________________________________________________________________ 
 1h6g(A) : TDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEdNYEPGVYTEKVLEATKLLSNTVpRFTEQVEAAVEALSSDPAQPdENEFIDASRLVYDG 
         :                                                                                                                          
 1l7c(C) : TDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEdNYEPGVYTEKVLEATKLLSNTVpRFTEQVEAAVEALSSd-----ENEFIDASRLVYDG 
           _______508______________________________________________________________________________________________________________ 

           _________                                                                                                                
 1h6g(A) : IRDIRKAVL                                                                                                                
         :                                                                                                                          
 1l7c(C) : IRDIRKAVL                                                                                                                
           _________                                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
51.7
Translation
(A)
1.4
Closure
(%)
99.6
Bending Residues
( green )
  508 - 509
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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