Apolipoprotein E

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Apolipoprotein E
  Conformer 1
(PDB)
1or3 (A)
  Conformer 2
(PDB)
1gs9 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 75 1.04   26 - 37   56 - 114   150 - 160
2 53 0.49   38 - 55   115 - 149

Sequence


           ______________37________________55________________________________________________________114___________________________ 
 1or3(A) : SGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLT-------aRLSKELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHL 
         :                                                                                                                          
 1gs9(A) : SGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLTPVAEETRARLSKELQAAQARLGADMEDVRGRLVQYRGEVQAMLGQSTEELRVRLASHL 
           ______________37________________55________________________________________________________114___________________________ 

           ___147__________________                                                                                                 
 1or3(A) : RKLRKRLLRDADDLQKRLAVYQA*                                                                                                 
         :                                                                                                                          
 1gs9(A) : RKLRKRLLRDADDLQKRLAVYQAG                                                                                                 
           ___147__________________                                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.0
Translation
(A)
-0.3
Closure
(%)
75.8
Bending Residues
( green )
  37 - 38
  55 - 56
  114 - 115
  147 - 151
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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