Arginine Repressor/activator Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Arginine Repressor/activator Protein
  Conformer 1
(PDB)
1f9n (A)
  Conformer 2
(PDB)
1f9n (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 73 0.5   74 - 111   113 - 147
2 68 0.7   7 - 73   112 - 112

Sequence


           _______________________________________________________________________73___________________________________111_________ 
 1f9n(A) : **KGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMG 
         :                                                                                                                          
 1f9n(B) : MNKGQRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKELHLVKVPTNNGSYKYSLPADQRFNPLSKLKRALMDAFVKIDSASHMIVLKTMPGNAQAIGALMDNLDWDEMMG 
           _______________________________________________________________________73___________________________________111_________ 

           _____________________________                                                                                            
 1f9n(A) : TICGDDTILIICRTPEDTEGVKNRLLELL                                                                                            
         :                                                                                                                          
 1f9n(B) : TICGDDTILIICRTPEDTEGVKNRLLELL                                                                                            
           _____________________________                                                                                            

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
15.0
Translation
(A)
-1.1
Closure
(%)
81.0
Bending Residues
( green )
  73 - 76
  111 - 114
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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