Coenzyme F420-Dependent N(5),n(10)- Methylenetetrahydromethanopterin Reductase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Coenzyme F420-Dependent N(5),n(10)- Methylenetetrahydromethanopterin Reductase
  Conformer 1
(PDB)
1z69 (D)
  Conformer 2
(PDB)
1z69 (C)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 265 0.15   3 - 223   282 - 325
2 58 0.3   224 - 281

Sequence


           ________________________________________________________________________________________________________________________ 
 1z69(D) : MKFGIEFVPSDPALKIAYYAKLSEQQGFDHVWITDHYNNRDVYSTLTVLALNTNSIKIGPGVTNSYTRNPAITASSIASIAEISGGRAVLGLGPGDKATFDAMGIAWKKPLATTKEAIQA 
         :                                                                                                                          
 1z69(C) : MKFGIEFVPSDPALKIAYYAKLSEQQGFDHVWITDHYNNRDVYSTLTVLALNTNSIKIGPGVTNSYTRNPAITASSIASIAEISGGRAVLGLGPGDKATFDAMGIAWKKPLATTKEAIQA 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________________________________213___________________________ 
 1z69(D) : IRDFISGKKVSMDGEMIKFAGAKLAFKAGNIPIYMGAQGPKMLELAGEIADGVLINASHPKDFEVAVEQIKKGAEKAGRDPSEVDVTAYACFSIDKDPVKAVNAAKVVVAFIVAGSPDLV 
         :                                                                                                                          
 1z69(C) : IRDFISGKKVSMDGEMIKFAGAKLAFKAGNIPIYMGAQGPKMLELAGEIADGVLINASHPKDFEVAVEQIKKGAEKAGRDPSEVDVTAYACFSIDKDPVKAVNAAKVVVAFIVAGSPDLV 
           __________________________________________________________________________________________213___________________________ 

           ______________________________________281______________________________________________                                  
 1z69(D) : LERHGIPVEAKSQIGAAIAKGDFGALMGGLVTPQMIEAFSICGTPDDCMKRIKDLEAIGVTQIVAGSPIGPAKEKAIKLIGKEIIAK                                  
         :                                                                                                                          
 1z69(C) : LERHGIPVEAKSQIGAAIAKGDFGALMGGLVTPQMIEAFSICGTPDDCMKRIKDLEAIGVTQIVAGSPIGPAKEKAIKLIGKEIIAK                                  
           ______________________________________281______________________________________________                                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.5
Translation
(A)
0.2
Closure
(%)
96.1
Bending Residues
( green )
  213 - 224
  281 - 284
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

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