DNA Primase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Primase
  Conformer 1
(PDB)
1eqn (A)
  Conformer 2
(PDB)
1eqn (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 168 0.93   246 - 277   284 - 425
2 132 0.43   117 - 245   278 - 283

Sequence


           ________________________________________________________________________________________________________________________ 
 1eqn(A) : RQTLYQLdGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGlVTNDQGRSYDRFRERVfPIRDKRGRVIGFGGRVLGNDTPKYLNSPE 
         :                                                                                                                          
 1eqn(B) : **TLYQLdGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGlVTNDQGRSYDRFRERVfPIRDKRGRVIGFGGRVLGNDTPKYLNSPE 
           ________________________________________________________________________________________________________________________ 

           ______244_____________________________277___283_________________________________________________________________________ 
 1eqn(A) : TDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYdVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYtDGRQLRFfLPDGEDPDTLVRKEGKEAF 
         :                                                                                                                          
 1eqn(B) : TDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYdVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYtDGRQLRFfLPDGEDPDTLVRKEGKEAF 
           ______244_____________________________277___283_________________________________________________________________________ 

           __________________________________________________________________                                                       
 1eqn(A) : EAReQApLSAFLFNSLpQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQL                                                       
         :                                                                                                                          
 1eqn(B) : EAReQApLSAFLFNSLpQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQL                                                       
           __________________________________________________________________                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.5
Translation
(A)
-0.1
Closure
(%)
99.7
Bending Residues
( green )
  244 - 246
  277 - 278
  283 - 284
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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