Helicase Pcra

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Helicase Pcra
  Conformer 1
(PDB)
2pjr (A)
  Conformer 2
(PDB)
2pjr (F)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 397 0.67   21 - 26   29 - 32   35 - 251   270 - 272   279 - 279   380 - 545
2 140 0.59   9 - 20   27 - 28   33 - 34   252 - 269   273 - 278   280 - 379

Sequence


           _______________20____26____32___________________________________________________________________________________________ 
 2pjr(A) : ***QLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLS 
         :                                                                                                                          
 2pjr(F) : LSEQLLAHLNKEQQEAVRTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDVWISTFHSMCVRILRRDIDRIGINRNFSILDPTDQLS 
           ______________720___726___732___________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2pjr(A) : VMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF 
         :                                                                                                                          
 2pjr(F) : VMKTILKEKNIDPKKFEPRTILGTISAAKNELLPPEQFAKRASTYYEKVVSDVYQEYQQRLLRNHSLDFDDLIMTTIQLFDRVPDVLHYYQYKFQYIHIDEYQDTNRAQYTLVKKLAERF 
           ________________________________________________________________________________________________________________________ 

           _____251_______________269______278_____________________________________________________________________________________ 
 2pjr(A) : QNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQ 
         :                                                                                                                          
 2pjr(F) : QNICAVGDADQSIYRWRGADIQNILSFERDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKPKRIWTENPEGKPILYYEAMNEADEAQFVAGRIREAVERGERRYRDFAVLYRTNAQ 
           _____951_______________969______978_____________________________________________________________________________________ 

           _____________379________________________________________________________________________________________________________ 
 2pjr(A) : SRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTEL 
         :                                                                                                                          
 2pjr(F) : SRVMEEMLLKANIPYQIVGGLKFYDRKEIKDILAYLRVIANPDDDLSLLRIINVPKRGIGASTIDKLVRYAADHELSLFEALGELEMIGLGAKAAGALAAFRSQLEQWTQLQEYVSVTEL 
           ____________1079________________________________________________________________________________________________________ 

           _________________________________________________________________                                                        
 2pjr(A) : VEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDELD                                                        
         :                                                                                                                          
 2pjr(F) : VEEVLDKSGYREMLKAERTIEAQSRLENLDEFLSVTKHFENVSDDKSLIAFLTDLALISDLDEL*                                                        
           _________________________________________________________________                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.7
Translation
(A)
-0.1
Closure
(%)
92.8
Bending Residues
( green )
  20 - 21
  26 - 29
  32 - 35
  251 - 252
  269 - 270
  272 - 275
  278 - 280
  379 - 380
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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