Helix-Destabilizing Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Helix-Destabilizing Protein
  Conformer 1
(PDB)
1je5 (B)
  Conformer 2
(PDB)
1je5 (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 132 0.72   5 - 66   69 - 69   92 - 156   168 - 180
2 22 0.82   67 - 68   70 - 78   157 - 167

Sequence


           ___________________________________________________________64____________78_____________________________________________ 
 1je5(B) : *AKKIFTSALGTAEPYAYIAKPDY------pRGVYKVDLTIPNKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPp---YEGDMPFFDNGDGTTTFKFKCYASFQDKKTKETKHINLVVV 
         :                                                                                                                          
 1je5(A) : MAKKIFTSALGTAEPYAYIAKPDYGNgFGNPRGVYKVDLTIPNKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPpLKPYEGDMPFFDNGDGTTTFKFKCYASFQDKKTKETKHINLVVV 
           ___________________________________________________________64____________78_____________________________________________ 

           _______________________156________167___________________________________                                                 
 1je5(B) : DSKGKKMEDVPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLVELATFGGGEDDWADEVEENGYVAS                                                 
         :                                                                                                                          
 1je5(A) : DSKGKKMEDVPIIGGGSKLKVKYSLVPYKWNTAVGASVKLQLESVMLVELAT------dWADEVEEN*****                                                 
           _______________________156________167___________________________________                                                 

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.6
Translation
(A)
0.0
Closure
(%)
97.8
Bending Residues
( green )
  64 - 70
  78 - 92
  156 - 157
  167 - 168
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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