Hypothetical Protein Ph0099

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Ph0099
  Conformer 1
(PDB)
1vdx (A)
  Conformer 2
(PDB)
1vgj (A)
  Window Length 13
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 96 0.41   8 - 38   68 - 97   127 - 162
2 57 0.64   39 - 67   98 - 126

Sequence


           ____________________________________38___________________________67___________________________96________________________ 
 1vdx(A) : MRAFIAIDVNESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGVFPNPNYIRVIWAGIENDEIIREMAREIEDELAKLGFKKEG 
         :                                                                                                                          
 1vgj(A) : *RAFIAIDVNESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFLGEITEEQAEEIKNILKKIAEKYKKHEVKVKGIGVFPNPNYIRVIWAGIENDEIIRE-aREIEDELAKLGFKKEG 
           ____________________________________38___________________________67___________________________96________________________ 

           ___126__________________________________________________________                                                         
 1vdx(A) : NFVAHITLGRVKFVKDKLGLTMKLKELANEDFGSFVVDAIELKKSTLTPKGPIYETLARFELSE                                                         
         :                                                                                                                          
 1vgj(A) : NFVAHITLGRVKFVKDKLGLT-kLKELANEDFGSFVVDAIELKKSTLTPKGPIYETLARFELSE                                                         
           ___126__________________________________________________________                                                         

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.2
Translation
(A)
0.1
Closure
(%)
99.7
Bending Residues
( green )
  38 - 39
  67 - 70
  96 - 100
  126 - 127
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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