Hypothetical Protein Pm0188

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hypothetical Protein Pm0188
  Conformer 1
(PDB)
2c83 (A)
  Conformer 2
(PDB)
2ex1 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 231 0.72   28 - 248   332 - 335   389 - 398
2 137 2.52   249 - 331   336 - 388   399 - 410

Sequence


           ________________________________________________________________________________________________________________________ 
 2c83(A) : *KTITLYLDPASLPALNQL-dFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELNIHLNIAHSVQLIRPILAYRFKHLDRVSIQQLNLYDDGS- 
         :                                                                                                                          
 2ex1(A) : MKTITLYLDPASLPALNQLMDFTQNNEDKTHPRIFGLSRFKIPDNIITQYQNIHFVELKDNRPTEALFTILDQYPGNIELNIHLNIAHSVQLIRPILAYRFAHLDRVSIQQLNLYDDGSM 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________________________________________________________248________________ 
 2c83(A) : eYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQK-dWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIF 
         :                                                                                                                          
 2ex1(A) : EYVDLEKEENKDISAEIKQAEKQLSHYLLTGKIKFDNPTIARYVWQSAFPVKYHFLSTDYFEKAEFLQPLKEYLAENYQKMDWTAYQQLTPEQQAFYLTLVGFNDEVKQSLEVQQAKFIF 
           _____________________________________________________________________________________________________248________________ 

           ________________________________________________________________331_____________________________________________________ 
 2c83(A) : TGTTTWEGNTEVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDIILNNAKNITNIPANISFEVL--tGLLPDKVGGVASSLYFSLPKEKISHIIFTSNKQVKSKEDAL 
         :                                                                                                                          
 2ex1(A) : TGTTTAEGNTDVREYYAQQQLNLLNHFTQAEGDLFIGDHYKIYFKGHPRGGEINDYILNNAKNITNIPANISFEVLMMTGLLPDKVGGVASSLYFSLPKEKISHIIFTSNK--------- 
           ________________________________________________________________331_____________________________________________________ 

           _388___________________________                                                                                          
 2c83(A) : NNPYVKV-rRLGIIDESQVIFWDSLKELGGG                                                                                          
         :                                                                                                                          
 2ex1(A) : nNPYVKVMRRLGIIDASQVIFWDSLKQL***                                                                                          
           _388___________________________                                                                                          

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
28.9
Translation
(A)
-0.1
Closure
(%)
98.4
Bending Residues
( green )
  248 - 249
  331 - 336
  388 - 404
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download