Adapter-Related Protein Complex 2 Alpha 2 Subunit

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adapter-Related Protein Complex 2 Alpha 2 Subunit
  Conformer 1
(PDB)
1w80 (A)
  Conformer 2
(PDB)
1kyu (A)
  Window Length 9
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 122 0.87   729 - 736   788 - 788   822 - 934
2 110 0.79   703 - 728   737 - 787   789 - 821

Sequence


           ___________________________________728_____736________________________________________________787_______________________ 
 1w80(A) : PGILAPLAPGSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVINIECISDFTEAPVLNIQFRYGGT 
         :                                                                                                                          
 1kyu(A) : *GSPGIRLGSSEDNFARFVCKNNGVLFENQLLQIGLKSEFRQNLGRMFIFYGNKTSTQFLNFTPTLICADDLQTNLNLQTKPVDPTVDGGAQVQQVVNIECISDFTEAPVLNIQFRYGGT 
           ___________________________________728_____736________________________________________________787_______________________ 

           ________821_____________________________________________________________________________________________________________ 
 1w80(A) : FQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRL 
         :                                                                                                                          
 1kyu(A) : FQNVSVKLPITLNKFFQPTEMASQDFFQRWKQLSNPQQEVQNIFKAKHPMDTEITKAKIIGFGSALLEEVDPNPANFVGAGIIHTKTTQIGCLLRLEPNLQAQMYRLTLRTSKDTVSQRL 
           ________821_____________________________________________________________________________________________________________ 

           ________                                                                                                                 
 1w80(A) : CELLSEQF                                                                                                                 
         :                                                                                                                          
 1kyu(A) : CELLSEQF                                                                                                                 
           ________                                                                                                                 

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
8.2
Translation
(A)
1.1
Closure
(%)
93.8
Bending Residues
( green )
  728 - 729
  736 - 737
  787 - 789
  821 - 822
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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