Alpha-1 Catenin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Alpha-1 Catenin
  Conformer 1
(PDB)
1h6g (A)
  Conformer 2
(PDB)
1h6g (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 117 0.76   509 - 628
2 113 0.49   394 - 508

Sequence


           ________________________________________________________________________________________________________________________ 
 1h6g(A) : DLRRQLRKAVXdHVSDSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRsASQLEALCPQVINAALALAAKPQSKLAQENdLFKEQWEKQVRVL 
         :                                                                                                                          
 1h6g(B) : ***************DSFLETNVPLLVLIEAAKNGNEKEVKEYAQVFREHANKLIEVANLACSISNNEEGVKLVRsASQLEALCPQVINAALALAAKPQSKLAQENdLFKEQWEKQVRVL 
           ________________________________________________________________________________________________________________________ 

           ____505_________________________________________________________________________________________________________________ 
 1h6g(A) : TDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEdNYEPGVYTEKVLEATKLLSNTVpRFTEQVEAAVEALSSDPAQPdENEFIDASRLVYDG 
         :                                                                                                                          
 1h6g(B) : TDAVDDITSIDDFLAVSENHILEDVNKCVIALQEKDVDGLDRTAGAIRGRAARVIHVVTSEdNYEPGVYTEKVLEATKLLSNTVpRFTEQVEAAVEALSSDPAQPdENEFIDASRLVYDG 
           ____505_________________________________________________________________________________________________________________ 

           __________                                                                                                               
 1h6g(A) : IRDIRKAVL*                                                                                                               
         :                                                                                                                          
 1h6g(B) : IRDIRKAVLi                                                                                                               
           __________                                                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
18.0
Translation
(A)
2.8
Closure
(%)
96.2
Bending Residues
( green )
  505 - 509
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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