Eukaryotic Translation Initiation Factor 5

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Eukaryotic Translation Initiation Factor 5
  Conformer 1
(PDB)
2ful (E)
  Conformer 2
(PDB)
2ful (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 81 0.42   252 - 327   357 - 361
2 55 0.35   328 - 356   362 - 387

Sequence


           _____________________________________________________________________________________324_____________________________356 
 2ful(E) : *PEFVNSELTQLDEYGEWILEQAGEDKENLPSDVELYKKAAELDVLNDPKIGCVLAQCLFDEDIVNEIAEHNAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDII 
         :                                                                                                                          
 2ful(A) : SPEFVNSELTQLDEYGEWILEQAGEDKENLPSDVELYKKAAELDVLNDPKIGCVLAQCLFDEDIVNEIAEHNAFFTKILVTPEYEKNFMGGIERFLGLEHKDLIPLLPKILVQLYNNDII 
           _____________________________________________________________________________________324_____________________________356 

           __361________________________________________                                                                            
 2ful(E) : SEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAEdDELE                                                                            
         :                                                                                                                          
 2ful(A) : SEEEIMRFGTKSSKKFVPKEVSKKVRRAAKPFITWLETAeL****                                                                            
           __361________________________________________                                                                            

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.6
Translation
(A)
-0.3
Closure
(%)
44.6
Bending Residues
( green )
  324 - 328
  356 - 357
  361 - 362
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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