Flagellum-Specific Atp Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Flagellum-Specific Atp Synthase
  Conformer 1
(PDB)
2dpy (B)
  Conformer 2
(PDB)
2dpy (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 348 0.78   97 - 454
2 70 1.12   27 - 96

Sequence


           ________________________________________________________________________96______________________________________________ 
 2dpy(B) : PAVRRYGRLTRATGLVLEATGLQLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARsGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPL 
         :                                                                                                                          
 2dpy(A) : **VRRYGRLTRATGLVLEATGLQLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYAR--kQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPL 
           ________________________________________________________________________96______________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2dpy(B) : QRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLI 
         :                                                                                                                          
 2dpy(A) : QRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2dpy(B) : MDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRL 
         :                                                                                                                          
 2dpy(A) : MDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRL 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________________                                                       
 2dpy(B) : FKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALDLIFPTV                                                       
         :                                                                                                                          
 2dpy(A) : FKQLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALDLIFPTV                                                       
           __________________________________________________________________                                                       

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.0
Translation
(A)
-1.2
Closure
(%)
74.4
Bending Residues
( green )
  96 - 97
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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