Aminopeptidase T

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Aminopeptidase T
  Conformer 1
(PDB)
2ayi (D)
  Conformer 2
(PDB)
2ayi (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 222 0.16   176 - 406
2 171 0.02   5 - 175

Sequence


           ________________________________________________________________________________________________________________________ 
 2ayi(D) : AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPAWLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQK 
         :                                                                                                                          
 2ayi(B) : AFKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIYGDQELARKRLALAPEEGLDKAPAWLYEGMARAFREGAARLAVSGSDPKALEGLPPEKVGRAQK 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________175___________________________________________________________________ 
 2ayi(D) : ANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPEEEAVRRLWEAIFQATpIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLCNPNLPT 
         :                                                                                                                          
 2ayi(B) : ANARAYKPALEAITEFVTNWTIVPFAHPGWARAVFPGLPEEEAVRRLWEAIFQATpIAAWEAHNRALHEKVAYLNARRFHALHFKGPGTDLVVGLAEGHLWQGGATATKGGRLCNPNLPT 
           __________________________________________________175___________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2ayi(D) : EEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALVPADNPIAKTGLVFFDTLFDENAASHIAFGQAYQENLEGgEAFRKRGGN 
         :                                                                                                                          
 2ayi(B) : EEVFTAPHRERVEGVVRASRPLALGGTLVEGIFARFERGFAVEVRAEKGEEVLRRLLDTDEGARRLGEVALVPADNPIAKTGLVFFDTLFDENAASHIAFGQAYQENLEGgEAFRKRGGN 
           ________________________________________________________________________________________________________________________ 

           _____________________________________                                                                                    
 2ayi(D) : ESLVHVDWMIGSEEMDVDGLYEDGTRTPLMRRGRWVV                                                                                    
         :                                                                                                                          
 2ayi(B) : ESLVHVDWMIGSEEMDVDGLYEDGTRTPLMRRGRWVV                                                                                    
           _____________________________________                                                                                    

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.6
Translation
(A)
0.2
Closure
(%)
70.5
Bending Residues
( green )
  175 - 186
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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