Ankyrin Repeat Family Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Ankyrin Repeat Family Protein
  Conformer 1
(PDB)
2aja (B)
  Conformer 2
(PDB)
2aja (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 198 0.59   6 - 212
2 125 0.83   213 - 346

Sequence


           ________________________________________________________________________________________________________________________ 
 2aja(B) : CNLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLtLSYKEAIHIFLPGTKNeQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLsDEIVKqAE 
         :                                                                                                                          
 2aja(A) : *NLTIHNIENYENDPQLRLIPWILWENLFQHFISANELSLtLSYKEAIHIFLPGTKNeQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLsDEIVKqAE 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________________________________212______________________________________ 
 2aja(B) : NYQAFRLAAENGHLHVLNRLCELAPTEIaiQAENYHAFRLAAENGHLHVLNRLCELAPTEATAiQAENYYAFRWAAVGRGHHNVINFLLDCPVlAYAEIHEFEYGEKYVNPFIARHVNRL 
         :                                                                                                                          
 2aja(A) : NYQAFRLAAENGHLHVLNRLCELAPTEIaiQAENYHAFRLAAENGHLHVLNRLCELAPTEATAiQAENYYAFRWAAVGRGHHNVINFLLDCPVlAYAEIHEFEYGEKYVNPFIARHVNRL 
           _______________________________________________________________________________212______________________________________ 

           _______________________________________________________________________________________________________                  
 2aja(B) : KEhDAFKLSNP------vTKSECLQGFYlRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYIN                  
         :                                                                                                                          
 2aja(A) : KEhDAFKLSNPDGVFDLVTKSECLQGFYlRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK*******                  
           _______________________________________________________________________________________________________                  

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
6.6
Translation
(A)
0.1
Closure
(%)
78.9
Bending Residues
( green )
  212 - 213
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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