Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1sk6 (E)
  Conformer 2
(PDB)
1ahr  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 36 2.43   7 - 27   63 - 77
2 35 2.07   28 - 62
3 66 1.01   80 - 145

Sequence


           _________________________27_________________________________62____________76____________________________________________ 
 1sk6(E) : ****TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEE 
         :                                                                                                                          
 1ahr    : ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMK--DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEE 
           _________________________27_________________________________62____________76____________________________________________ 

           ____________________________                                                                                             
 1sk6(E) : VDEMIREADIDGDGQVNYEEFVQMMTA*                                                                                             
         :                                                                                                                          
 1ahr    : VDEMIREADIDGDGQVNYEEFVTMMTSK                                                                                             
           ____________________________                                                                                             

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
45.3
Translation
(A)
1.9
Closure
(%)
59.7
Bending Residues
( green )
  27 - 30
  62 - 63
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
79.2
Translation
(A)
-2.2
Closure
(%)
7.1
Bending Residues
( green )
  76 - 82
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download