Cpn60(groel)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cpn60(groel)
  Conformer 1
(PDB)
1we3 (L)
  Conformer 2
(PDB)
1we3 (M)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 88 0.03   136 - 189   375 - 408
2 247 0.05   5 - 135   410 - 525
3 185 0.08   190 - 374

Sequence


           ________________________________________________________________________________________________________________________ 
 1we3(L) : AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEK 
         :                                                                                                                          
 1we3(M) : AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEK 
           ________________________________________________________________________________________________________________________ 

           _________134___________________________________________________188______________________________________________________ 
 1we3(L) : AVEAAVEKIKALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQT 
         :                                                                                                                          
 1we3(M) : AVEAAVEKIKALAIPVEDRKAIEEVATISANDPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRELLPILEQVAQT 
           _________134___________________________________________________188______________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1we3(L) : GKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYARE 
         :                                                                                                                          
 1we3(M) : GKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENATLSMLGRAERVRITKDETTIVGGKGKKEDIEARINGIKKELETTDSEYARE 
           ________________________________________________________________________________________________________________________ 

           ______371__________________________________408__________________________________________________________________________ 
 1we3(L) : KLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNA 
         :                                                                                                                          
 1we3(M) : KLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKKLEGDEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETKNPRYGFNA 
           ______371__________________________________408__________________________________________________________________________ 

           ______________________________________________                                                                           
 1we3(L) : ATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPE                                                                           
         :                                                                                                                          
 1we3(M) : ATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKP*                                                                           
           ______________________________________________                                                                           

Morph

Morph animation in progress.
Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
10.5
Translation
(A)
0.0
Closure
(%)
33.5
Bending Residues
( green )
  134 - 137
  408 - 410
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
9.3
Translation
(A)
0.0
Closure
(%)
87.9
Bending Residues
( green )
  188 - 190
  371 - 375
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download