Dnak Suppressor Protein

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Dnak Suppressor Protein
  Conformer 1
(PDB)
1tjl (C)
  Conformer 2
(PDB)
1tjl (E)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 62 0.32   34 - 67   108 - 135
2 25 0.57   9 - 33
3 40 0.37   68 - 107

Sequence


           _________________________33________________________________67_____________________________________107___________________ 
 1tjl(C) : RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRL 
         :                                                                                                                          
 1tjl(E) : RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRL 
           _________________________33________________________________67_____________________________________107___________________ 

           _________________________                                                                                                
 1tjl(C) : EARPTADLCIDCKTLAEIREKQMAG                                                                                                
         :                                                                                                                          
 1tjl(E) : EARPTADLCIDCKTLAEIREKQMAG                                                                                                
           _________________________                                                                                                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
11.0
Translation
(A)
0.1
Closure
(%)
99.0
Bending Residues
( green )
  33 - 34
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
4.3
Translation
(A)
-0.1
Closure
(%)
9.5
Bending Residues
( green )
  67 - 77
  107 - 110
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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