DNA Primase/helicase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name DNA Primase/helicase
  Conformer 1
(PDB) 		1nui (A)
  Conformer 2
(PDB) 		1nui (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)		 Residues
1 202 0.64   52 - 253
2 33 1.29   12 - 51

Sequence


           ____________________________________51__________________________________________________________________________________ 
 1nui(A) : VFLYHIPCDNCGSSDGNSLFSDGHTFCYVCEKWTAtKERASKRKPSGGKPGTYNVWNFGESNGRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTT 
         :                                                                                                                          
 1nui(B) : VFLYHIPCDNCGSSDGNSLFSDGHTFCYVCEKW---kERASKRKPSGGKPGTYNVWNFGESNGRYSALTARGISKETCQKAGYWIAKVDGVMYQVADYRDQNGNIVSQKVRDKDKNFKTT 
           ____________________________________51__________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1nui(A) : GSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLPCKDANECHLNGHDREIMEQ 
         :                                                                                                                          
 1nui(B) : GSHKSDALFGKHLWNGGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKVRVAVLPCKDANECHLNGHDREIMEQ 
           ________________________________________________________________________________________________________________________ 

           __                                                                                                                       
 1nui(A) : VW                                                                                                                       
         :                                                                                                                          
 1nui(B) : VW                                                                                                                       
           __                                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue ) 		1
Moving Domain
( red ) 		2
Rotation Angle
(deg) 		39.7
Translation
(A) 		0.5
Closure
(%) 		98.7
Bending Residues
( green ) 		  51 - 57
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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