5-Enolpyruvylshikimate-3-Phosphate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 5-Enolpyruvylshikimate-3-Phosphate Synthase
  Conformer 1
(PDB)
1rf5 (B)
  Conformer 2
(PDB)
1rf5 (D)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 218 0.45   15 - 15   17 - 20   24 - 228   254 - 254   259 - 259   261 - 264   283 - 284
2 205 0.78   3 - 14   16 - 16   21 - 23   229 - 253   255 - 258   260 - 260   265 - 282   285 - 425

Sequence


           ____________14____20_23_________________________________________________________________________________________________ 
 1rf5(B) : MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKR 
         :                                                                                                                          
 1rf5(D) : MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKR 
           ____________14____20_23_________________________________________________________________________________________________ 

           _________________________________________________________________________________________________________228____________ 
 1rf5(B) : PMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWL 
         :                                                                                                                          
 1rf5(D) : PMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWL 
           _________________________________________________________________________________________________________228____________ 

           __________253__258___264_______________282______________________________________________________________________________ 
 1rf5(B) : VAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITP 
         :                                                                                                                          
 1rf5(D) : VAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITP 
           __________253__258___264_______________282______________________________________________________________________________ 

           ___________________________________________________________________                                                      
 1rf5(B) : TADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG                                                      
         :                                                                                                                          
 1rf5(D) : TADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG                                                      
           ___________________________________________________________________                                                      

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.1
Translation
(A)
0.1
Closure
(%)
28.8
Bending Residues
( green )
  14 - 17
  20 - 21
  23 - 24
  228 - 229
  253 - 255
  258 - 261
  264 - 265
  282 - 285
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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