Hemoglobin Alpha Chain

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hemoglobin Alpha Chain
  Conformer 1
(PDB)
1z8u (D)
  Conformer 2
(PDB)
1yzi (A)
  Window Length 15
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 37 1.43   16 - 17   54 - 71   112 - 128
2 24 0.56   27 - 37   99 - 111

Sequence


           ______________16___________________37________________________________71_____________________________________111_________ 
 1z8u(D) : *LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPA 
         :                                                                                                                          
 1yzi(A) : VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPA 
           ______________16___________________37________________________________71_____________________________________111_________ 

           _____________________                                                                                                    
 1z8u(D) : VHASLDKFLASVSTVL*****                                                                                                    
         :                                                                                                                          
 1yzi(A) : VHASLDKFLASVSTVLTSKYR                                                                                                    
           _____________________                                                                                                    

Morph

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Status: Initialising

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
23.8
Translation
(A)
-0.3
Closure
(%)
83.0
Bending Residues
( green )
  16 - 27
  37 - 57
  71 - 99
  111 - 112
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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