Hla-Cw3 (Heavy Chain)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hla-Cw3 (Heavy Chain)
  Conformer 1
(PDB)
1efx (A)
  Conformer 2
(PDB)
1qqd (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 176 0.93   4 - 179
2 93 0.74   180 - 272

Sequence


           ________________________________________________________________________________________________________________________ 
 1efx(A) : GSHSMRYFYTAVSRPGRGEPHFIAVGYVDDTQFVRFDSDAASPRGEPRAPWVEQEGPEYWDRETQKYKRQAQTDRVSLRNLRGYYNQSEAGSHIIQRMYGCDVGPDGRLLRGYDQYAYDG 
         :                                                                                                                          
 1qqd(A) : *SHSMRYFSTSVSWPGRGEPRFIAVGYVDDTQFVRFDSDAASPRGEPREPWVEQEGPEYWDRETQKYKRQAQADRVNLRKLRGYYNQSEDGSHTLQRMFGCDLGPDGRLLRGYNQFAYDG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________179_____________________________________________________________ 
 1efx(A) : KDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQLRAYLEGLCVEWLRRYLKNGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGT 
         :                                                                                                                          
 1qqd(A) : KDYIALNEDLRSWTAADTAAQITQRKWEAAREAEQRRAYLEGTCVEWLRRYLENGKETLQRAEHPKTHVTHHPVSDHEATLRCWALGFYPAEITLTWQWDGEDQTQDTELVETRPAGDGT 
           ________________________________________________________179_____________________________________________________________ 

           ______________________________________                                                                                   
 1efx(A) : FQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRWEPSS                                                                                   
         :                                                                                                                          
 1qqd(A) : FQKWAAVVVPSGEEQRYTCHVQHEGLPEPLTLRW****                                                                                   
           ______________________________________                                                                                   

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.2
Translation
(A)
0.3
Closure
(%)
99.6
Bending Residues
( green )
  179 - 180
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

Download and extract PyMOL PML script file Download