Hydrolase, Haloacid Dehalogenase Family

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Hydrolase, Haloacid Dehalogenase Family
  Conformer 1
(PDB)
1yv9 (A)
  Conformer 2
(PDB)
1yv9 (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 154 0.46   4 - 5   40 - 45   74 - 182   185 - 186   189 - 192   197 - 200   207 - 213   215 - 219   222 - 233   236 - 236   241 - 242
2 99 0.4   6 - 39   46 - 73   183 - 184   187 - 188   193 - 196   201 - 206   214 - 214   220 - 221   234 - 235   237 - 240   243 - 256

Sequence


           ___5________________________________39____45__________________________73________________________________________________ 
 1yv9(A) : SLDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVG 
         :                                                                                                                          
 1yv9(B) : SLDYQGYLIDLDGTIYLGKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTATLATIDYMKEANRGKKVFVIGEAGLIDLILEAGFEWDETNPDYVVVG 
           ___5________________________________39____45__________________________73________________________________________________ 

           __________________________________________________________182_______192_196_______206____213_________________233____240_ 
 1yv9(A) : LDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLP 
         :                                                                                                                          
 1yv9(B) : LDTELSYEKVVLATLAIQKGALFIGTNPDKNIPTERGLLPGAGSVVTFVETATQTKPVYIGKPKAIIMERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLVTSGFTPKSAVPTLP 
           __________________________________________________________182_______192_196_______206____213_________________233____240_ 

           _________________                                                                                                        
 1yv9(A) : TPPTYVVDSLDEWTFEG                                                                                                        
         :                                                                                                                          
 1yv9(B) : TPPTYVVDSLDEWTFEG                                                                                                        
           _________________                                                                                                        

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.0
Translation
(A)
0.0
Closure
(%)
15.9
Bending Residues
( green )
  5 - 6
  39 - 40
  45 - 46
  73 - 74
  182 - 189
  192 - 193
  196 - 201
  206 - 207
  213 - 222
  233 - 237
  240 - 243
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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