Acetyl-Coenzyme A Synthetase 1

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Acetyl-Coenzyme A Synthetase 1
  Conformer 1
(PDB)
1ry2 (A)
  Conformer 2
(PDB)
1pg4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 492 1.98   76 - 576
2 110 3.58   577 - 711

Sequence


           ________________________________________________________________________________________________________________________ 
 1ry2(A) : *****************QDYQRLHKESIEDPAKFFGSKATQFLNWSKPFDKVFIPDPKTGRPSFQNNAWFLNGQLNACYNCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQV 
         :                                                                                                                          
 1pg4(A) : HKHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQG-KILDWITPYQKVKNTSFAPGNVSIK---WYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ry2(A) : AQVLTYSMGVRKGDTVAVYMPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRE--TPGVRHVLVYRKTNNPSVAFHAPRDLDWA 
         :                                                                                                                          
 1pg4(A) : ANTLL-DLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGS-DIDWQEGRDLWWR 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ry2(A) : TEKKKYKTYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAP 
         :                                                                                                                          
 1pg4(A) : DLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAP 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1ry2(A) : TALRLLKRAGDSYIENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFAR 
         :                                                                                                                          
 1pg4(A) : TAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIE-LKAGSATRPFFGVQPALVD-NEGHP-QEGATEGNLVITDSWPGQAR 
           ________________________________________________________________________________________________________________________ 

           ______________________________________575_______________________________________________________________________________ 
 1ry2(A) : TIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKlQDIKKHLVFT-----VRKDIGPFAAPKL 
         :                                                                                                                          
 1pg4(A) : TLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDV 
           ______________________________________516_______________________________________________________________________________ 

           __________________________________________                                                                               
 1ry2(A) : IILVDDLPKTRSGKIMRRILRKILA---nPGIVRHLIDSVKL                                                                               
         :                                                                                                                          
 1pg4(A) : LHWTDSLPKTRSGKIMRRILRKIAAGDaDPGVVEKLLEEKQA                                                                               
           __________________________________________                                                                               

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
140.5
Translation
(A)
-0.5
Closure
(%)
46.3
Bending Residues
( green )
  575 - 577
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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