Actin-Like Protein 3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin-Like Protein 3
  Conformer 1
(PDB)
1u2v (A)
  Conformer 2
(PDB)
1tyq (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 212 0.46   4 - 150   161 - 164   176 - 179   185 - 187   191 - 191   310 - 317   322 - 322   345 - 351   368 - 416
2 183 0.45   151 - 160   165 - 175   180 - 184   188 - 190   192 - 309   318 - 321   323 - 344   352 - 367

Sequence


           ________________________________________________________________________________________________________________________ 
 1u2v(A) : MAGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKEvMKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMF 
         :                                                                                                                          
 1tyq(A) : *AGRLPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKE-mKGVDDLDFFIGDEAIEKPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENREYTAEIMF 
           ________________________________________________________________________________________________________________________ 

           ________________150_______160_164_____172____179__184___190_____________________________________________________________ 
 1u2v(A) : ESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSK 
         :                                                                                                                          
 1tyq(A) : ESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSK 
           ________________150_______160_164_____172____179__184___190_____________________________________________________________ 

           ______________________________________________________308______317_321____________________344_348___________367_________ 
 1u2v(A) : WIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELkPKPIDVQVITHHMQRYA 
         :                                                                                                                          
 1tyq(A) : WIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEEL-pKPIDVQVITHHMQRYA 
           ______________________________________________________308______317_321____________________344_348___________367_________ 

           __________________________________________                                                                               
 1u2v(A) : VWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                                               
         :                                                                                                                          
 1tyq(A) : VWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVFGVMS                                                                               
           __________________________________________                                                                               

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.9
Translation
(A)
-0.2
Closure
(%)
91.3
Bending Residues
( green )
  150 - 151
  160 - 161
  164 - 165
  172 - 177
  179 - 180
  184 - 185
  187 - 188
  190 - 192
  308 - 311
  317 - 318
  321 - 323
  344 - 345
  348 - 361
  367 - 368
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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