Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Actin
  Conformer 1
(PDB)
1atn (A)
  Conformer 2
(PDB)
2zwh (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 241 2.2   7 - 143   156 - 159   165 - 165   169 - 175   177 - 183   261 - 265   267 - 297   299 - 299   311 - 311   315 - 322   331 - 370
2 122 1.73   144 - 155   160 - 164   166 - 168   176 - 176   184 - 260   266 - 266   298 - 298   300 - 310   312 - 314   323 - 330

Sequence


           ________________________________________________________________________________________________________________________ 
 1atn(A) : DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
         :                                                                                                                          
 2zwh(A) : DEDETTALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEgIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
           ________________________________________________________________________________________________________________________ 

           ___________________143_________155_159__164_168____175_____183__________________________________________________________ 
 1atn(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
         :                                                                                                                          
 2zwh(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
           ___________________143_________155_159__164_168____175_____183__________________________________________________________ 

           ________________260__265_____________________________297__________310_314___320_______330_______________________________ 
 1atn(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
         :                                                                                                                          
 2zwh(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
           ________________260__265_____________________________297__________310_314___320_______330_______________________________ 

           ______________                                                                                                           
 1atn(A) : YDEAGPSIVHR***                                                                                                           
         :                                                                                                                          
 2zwh(A) : YDEAGPSIVHRKCF                                                                                                           
           ______________                                                                                                           

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
14.5
Translation
(A)
0.3
Closure
(%)
72.2
Bending Residues
( green )
  143 - 144
  155 - 156
  159 - 160
  164 - 166
  168 - 169
  175 - 177
  183 - 184
  260 - 261
  265 - 267
  297 - 300
  310 - 312
  314 - 315
  320 - 325
  330 - 331
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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