Adenylate Kinase Isoenzyme-2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Adenylate Kinase Isoenzyme-2
  Conformer 1
(PDB)
2ak2  
  Conformer 2
(PDB)
1ak2  
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 180 0.28   18 - 139   141 - 142   155 - 157   177 - 229
2 32 0.23   140 - 140   143 - 154   158 - 176

Sequence


           ________________________________________________________________________________________________________________________ 
 2ak2    : PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD 
         :                                                                                                                          
 1ak2    : PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD 
           ________________________________________________________________________________________________________________________ 

           ___139____________154__________________175__________________________________________________________                     
 2ak2    : SLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKATS                     
         :                                                                                                                          
 1ak2    : SLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDITGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKATS                     
           ___139____________154__________________175__________________________________________________________                     

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
4.0
Translation
(A)
0.0
Closure
(%)
94.0
Bending Residues
( green )
  139 - 143
  154 - 155
  157 - 158
  175 - 178
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

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