Beta-Actin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Actin
  Conformer 1
(PDB)
2btf (A)
  Conformer 2
(PDB)
1nwk (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 132 0.71   9 - 34   69 - 146   341 - 369
2 22 0.94   35 - 68
3 194 0.98   147 - 340

Sequence


           _______________________________34________________________________68_____________________________________________________ 
 2btf(A) : DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 
         :                                                                                                                          
 1nwk(A) : ****TALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPR------------sYVGDEAQSKRGILTLKYPIE-gIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQ 
           _______________________________34________________________________68_____________________________________________________ 

           ______________________146_______________________________________________________________________________________________ 
 2btf(A) : IMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYE 
         :                                                                                                                          
 1nwk(A) : IMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYE 
           ______________________146_______________________________________________________________________________________________ 

           ________________________________________________________________________________________________340_____________________ 
 2btf(A) : LPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 
         :                                                                                                                          
 1nwk(A) : LPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWITKQE 
           ________________________________________________________________________________________________340_____________________ 

           ______________                                                                                                           
 2btf(A) : YDESGPSIVHRKCF                                                                                                           
         :                                                                                                                          
 1nwk(A) : YDEAGPSIVH****                                                                                                           
           ______________                                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.7
Translation
(A)
0.5
Closure
(%)
98.6
Bending Residues
( green )
  34 - 35
  68 - 69
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
8.4
Translation
(A)
-0.2
Closure
(%)
44.8
Bending Residues
( green )
  146 - 147
  340 - 341
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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