Beta-Lactamase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Beta-Lactamase
  Conformer 1
(PDB)
4jf6 (A)
  Conformer 2
(PDB)
4jf4 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 210 0.43   38 - 99   116 - 122   130 - 271
2 23 0.33   100 - 115   123 - 129

Sequence


           __________________________________________________________________99_____________115____122____129______________________ 
 4jf6(A) : ***GHNQVIHQYFDEKNTSGVLVIQTDKKINLYGNALSRANTEYVPASTF-mLNALIGLENQKTDINEIFKWKGEKRSFTAWEKDMTLGEAMKLSAVPVYQELARRIGLDLMQKeVKRIG 
         :                                                                                                                          
 4jf4(A) : IVQGHNQVIHQYFDEKNTSGVLVIQTDKKINLYGNALSRANTEYVPASTFKMLNALIGLENQKTDINEIFKWKGEKRSFTAWEKDMTLGEAMKLSAVPVYQELARRIGLDLMQKEVKRIG 
           __________________________________________________________________99_____________115____122____129______________________ 

           ________________________________________________________________________________________________________________________ 
 4jf6(A) : FGNAEIGQQVDNFWLVGPLKVTPIQEVEFVSQLAHTQLPFSEKVQANVKNMLLLEESNGYKIFGKTGWAMDIKPQVGWLTGWVEQPDGKIVAFALNMEMRSEMPASIRNELLMKSLKQLN 
         :                                                                                                                          
 4jf4(A) : FGNAEIGQQVDNFWLVGPLKVTPIQEVEFVSQLAHTQLPFSEKVQANVKNMLLLEESNGYKIFGKTGWAMDIKPQVGWLTGWVEQPDGKIVAFALNMEMRSEMPASIRNELLMKSLKQLN 
           ________________________________________________________________________________________________________________________ 

           __                                                                                                                       
 4jf6(A) : II                                                                                                                       
         :                                                                                                                          
 4jf4(A) : II                                                                                                                       
           __                                                                                                                       

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
5.6
Translation
(A)
0.2
Closure
(%)
70.9
Bending Residues
( green )
  99 - 100
  115 - 116
  122 - 123
  129 - 130
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification:

No Contacts

PyMOL Script

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