Calcium-Gated Potassium Channel Mthk

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calcium-Gated Potassium Channel Mthk
  Conformer 1
(PDB)
2fy8 (B)
  Conformer 2
(PDB)
2aej (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 112 1.01   118 - 229
2 105 1.56   230 - 334

Sequence


           ________________________________________________________________________________________________________________229_____ 
 2fy8(B) : SRHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVI 
         :                                                                                                                          
 2aej(A) : *RHVVICGWSESTLECLRELRGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCILGIRKIDESVRIIAEAERYENIEQLRMAGADQVISPFVI 
           ________________________________________________________________________________________________________________229_____ 

           _________________________________________________________________________________________________________                
 2fy8(B) : SGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISA***                
         :                                                                                                                          
 2aej(A) : SGRLMSRSIDDGYEAMFVQDVLAEESTRRMVEVPIPEGSKLEGVSVLDADIHDVTGVIIIGVGRGDELIIDPPRDYSFRAGDIILGIGKPEEIERLKNYISALVP                
           _________________________________________________________________________________________________________                

Morph

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
17.4
Translation
(A)
-0.3
Closure
(%)
52.0
Bending Residues
( green )
  229 - 230
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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