Calmodulin (Vertebrate)

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin (Vertebrate)
  Conformer 1
(PDB)
1cdl (A)
  Conformer 2
(PDB)
1cdm (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 69 0.83   7 - 73   112 - 113
2 59 0.63   84 - 111   114 - 144

Sequence


           ___________________________________________________________________72__________________________________109______________ 
 1cdl(A) : *TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
         :                                                                                                                          
 1cdm(A) : LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA----------eIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDE 
           ___________________________________________________________________72__________________________________109______________ 

           _______________________                                                                                                  
 1cdl(A) : MIREADIDGDGQVNYEEFVQMMT                                                                                                  
         :                                                                                                                          
 1cdm(A) : MIREADIDGDGQVNYEEFVQMMT                                                                                                  
           _______________________                                                                                                  

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
22.8
Translation
(A)
-1.3
Closure
(%)
68.5
Bending Residues
( green )
  72 - 85
  109 - 117
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Mixed

PyMOL Script

Download and extract PyMOL PML script file Download