Calmodulin

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Calmodulin
  Conformer 1
(PDB)
1cll (A)
  Conformer 2
(PDB)
2bki (B)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 33 1.05   6 - 27   62 - 72
2 34 1.25   28 - 61
3 70 1.51   76 - 145

Sequence


           _______________________27________________________________61_________72__________________________________________________ 
 1cll(A) : *LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 
         :                                                                                                                          
 2bki(B) : QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVD 
           _______________________27________________________________61_________72__________________________________________________ 

           _________________________                                                                                                
 1cll(A) : EMIREADIDGDGQVNYEEFVQMMTA                                                                                                
         :                                                                                                                          
 2bki(B) : EMIREADIDGDGQVNYEEFVQMMTA                                                                                                
           _________________________                                                                                                

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
26.9
Translation
(A)
1.0
Closure
(%)
91.9
Bending Residues
( green )
  27 - 30
  61 - 62
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
175.3
Translation
(A)
0.6
Closure
(%)
76.5
Bending Residues
( green )
  72 - 76
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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