Capsid Protein P24

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Capsid Protein P24
  Conformer 1
(PDB)
1e6j (P)
  Conformer 2
(PDB)
3h47 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 133 1.25   13 - 148
2 57 0.63   149 - 217

Sequence


           ________________________________________________________________________________________________________________________ 
 1e6j(P) : *******VHQAISPRTLNAWVKVVEEKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPVHAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPP 
         :                                                                                                                          
 3h47(A) : PIVQNqMVHQCISPRTLNAWVKVVEEKAFSPEVIPMFSALSCGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVH---iAPGQMREPRGSDIAGTTSTLQEQIGWMTHNPP 
           ________________________________________________________________________________________________________________________ 

           ___________________145___________________________________________________________________________                        
 1e6j(P) : IPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTILKALGPAATLEEMMTACQG                        
         :                                                                                                                          
 3h47(A) : IPVGEIYKRWIILGLNKIVRMYSPTSILDIRQGPKEPFRDYVDRFYKTLRAE------------tLLVQNANPDCKTILKALGPGATLEEMMTACQ*                        
           ___________________145___________________________________________________________________________                        

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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
154.9
Translation
(A)
-1.1
Closure
(%)
47.4
Bending Residues
( green )
  145 - 150
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

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