Complement C3

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Complement C3
  Conformer 1
(PDB)
2a73 (B)
  Conformer 2
(PDB)
2b39 (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 889 1.9   675 - 679   705 - 706   734 - 1399   1406 - 1636
2 69 2.41   655 - 674   680 - 704   707 - 733   1400 - 1405

Sequence


           ________________________________________________________________________________________________________________________ 
 2a73(B) : ************************************************************************************************************************ 
         :                                                                                                                          
 2b39(A) : TPNILRLESEETVVLEAHGGQGTIQVSVTVHDFPAKKQVLSNENTQLNSNNGYLSTVTIKIPASKELKSDKGHKFVTVVATFGNVQVEKVVLISLQSGYLFIQTDKTIYTPGSTVLYRVF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : ************************************************************************************************************************ 
         :                                                                                                                          
 2b39(A) : TVDHKLLPVGQTVFITIETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKAYYEDSPQQVFSAEFEVKEYVLPSFEVQLEPEEKFYYIDDPDGLKVNIIARFLYGEQVDGTAF 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : ************************************************************************************************************************ 
         :                                                                                                                          
 2b39(A) : VIFGVQDGDRRISLTHSLTRVPINDGNGEAILKRQVLLNGVQPSRADALVGKSIYVSATVILQSGSDMVEAERTGIPIVTSPYQIHFTKTPKFFKPAMPFDLMVYVTNPDGSPARHIPVV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : ************************************************************************************************************************ 
         :                                                                                                                          
 2b39(A) : TQGSNVQSLTQDDGVAKLSINTQNKRDPLTITVRTKKDNIPEGRQATRTMQALPYNTQGNSNNYLHLSVPRVELKPGETLNVNFHLRTDPGEQAKIRYYTYMIMNKGKLLKVGRQYREPG 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : ************************************************************************************************************************ 
         :                                                                                                                          
 2b39(A) : QDLVVLPLTITSDFIPSFRLVAYYTLINAKGQREVVADSVWVDVKDSCMGTLVVKNGGKEEKHHRPGQQITLKIEADQGARVGLVAVDKGVFVLNKKNKLTQRKIWDVVEKADIGCTPGS 
           ________________________________________________________________________________________________________________________ 

           _______________________________________________________674__679______________________704________________730_____________ 
 2a73(B) : **********************************VQLTEKRMDKVGKYPKELRKCCEDGMRENPMRFSCQRRTRFISLGEACKKVFLDCCNYITELRRQHAR--AlDEDIIAEENIVSRS 
         :                                                                                                                          
 2b39(A) : GRNYAGVFTDAGLTLKTSQGLETQQRADPQCPQsVQLMEKRMDKAGQYSSDLRKCCEDGMRDNPMKFPCQRRAQFILQGDACVKAFLDCCEYITQLRQQHSRDGALdDDIIPEEDIISRS 
           _______________________________________________________694__699______________________724________________750_____________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : EFPESWLWNV-EDLKEPPKNGISTKLMNIFLKDSITTWEILAVSMSDKKGICVADPFEVTVMQDFFIDLRLPYSVVRNEQVEIRAVLYNYRQNQELKVRVELLHNPAFCSLATTKRRHQQ 
         :                                                                                                                          
 2b39(A) : QFPESWLWTVIEDLKQADKNGISTKLMNVFLKDSITTWEILAVSLSDKKGICVADPYEVTVMQDFFIDLRLPYSVVRNEQVEIRAILYNYREAENLKVRVELLYNPAFCSLATAKKRHQQ 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : TVTIPPKSSLSVPYVIVPLKTGLQEVEVKAAVYHHFISDGVRKSLKVVPEGIRMNKTVAVRTLDPERLGREGVQKEDIPPADLSDQVPDTESETRILLQGTPVAQMTEDAVDAERLKHLI 
         :                                                                                                                          
 2b39(A) : TITIPARSSVAVPYVIVPLKIGLHEVEVKAAVYNHFISDGVKKTLKVVPEGVRVNKTVAVRTLNPEHLGQGGVQREEVPAADLSDQVPDTESETKILLQGTPVAQMTEDAIDGERLKHLI 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : VTPSGCGEQNMIGMTPTVIAVHYLDETEQWEKFGLEKRQGALELIKKGYTQQLAFRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLIAIDSQVLCGAVKWLILEKQKPDGVFQEDAPV 
         :                                                                                                                          
 2b39(A) : QTPSGCGEQNMIGMTPTVIAVHYLDSTDQWEKFGLEKRQESLELIRKGYTQQLAFRQKSSAYAAFQYRPPSTWLTAYVVKVFALAANLIAIDSKDLCETVKWLILEKQKPDGIFQEDGPV 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : IHQE------nNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANYMNLQRSYTVAIAGYALAQMGRLKGPLLNKFLTTAKDKNRWEDPGKQLYNVEATSYALLALLQLK 
         :                                                                                                                          
 2b39(A) : IHQEMIGGFRDTREKDVSLTAFVLIALHEAKDICEAQVNSLGRSIAKAGDFLENHYRELRRPYTVAIAAYALALLGKLEGDRLTKFLNTAKEKNRWEEPNQKLYNVEATSYALLALLARK 
           ________________________________________________________________________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : DFDFVPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDAPDHQELNLDVSLQLPSRSSKITHRIHWESASLLRSEETKENEGFTVTAEGKGQGTLSVVTMYHAKAKDQLTCNKFDLK 
         :                                                                                                                          
 2b39(A) : DYDTTPPVVRWLNEQRYYGGGYGSTQATFMVFQALAQYQKDVPDHKELNLDVSIQLPSRNSAVRHRILWESASLLRSEETKENERFTVKAEGKGQGTLSVVTVYHAKLKGKVSCKKFDLR 
           ________________________________________________________________________________________________________________________ 

           _____________________________________________________1399__1405_________________________________________________________ 
 2a73(B) : VTIKPAPETEKRPQDAKNTMILEICTRYRGDQDATMSILDISMMTGFAPDTDDLKQLANGVDRYISKYELDKAFSDRNTLIIYLDKVSHSEDDCLAFKVHQYFNVELIQPGAVKVYAYYN 
         :                                                                                                                          
 2b39(A) : VSIRPAPETVKKPQDAKGSMILDICTKYLGDQDATMSILDISMMTGFSPDVEDLKTLSTGVDRYISKYEMNRD-SNKNTLIIYLDKVSHTVEDCLSFKVHQYFNVGLIQPGAVKVYSYYN 
           _____________________________________________________1420__1426_________________________________________________________ 

           ________________________________________________________________________________________________________________________ 
 2a73(B) : LEESCTRFYHPEKEDGKLNKLCRDELCRCAEENCFIQKSDDKVTLEERLDKACEPGVDYVYKTRLVKVQLSNDFDEYIMAIEQTIKSGSDEVQVGQQRTFISPIKCREALKLEEKKHYLM 
         :                                                                                                                          
 2b39(A) : LDETCIRFYHPDKEDGMLSKLCHKDTCRCAEENCF--------tLEDRLDKACEPGVDYVYKTRLIQKKLEDDFDEYIMVIENIIKSGSDEVQVKQERKFISHIKCREALKLKEGAHYLV 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________                                                              
 2a73(B) : WGLSSDFWGEKPNLSYIIGKDTWVEHWPEEDECQDEENQKQCQDLGAFTESMVVFGCPN                                                              
         :                                                                                                                          
 2b39(A) : WGVSSDLWGEKPKISYIIGKDTWVELWPEAEECQDEENQKQCEDLANFTENMVVFGCPN                                                              
           ___________________________________________________________                                                              

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
16.0
Translation
(A)
-0.6
Closure
(%)
99.7
Bending Residues
( green )
  674 - 675
  679 - 680
  704 - 707
  730 - 734
  1399 - 1400
  1405 - 1406
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

PyMOL Script

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