Cyclin-Dependent Protein Kinase 2

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name Cyclin-Dependent Protein Kinase 2
  Conformer 1
(PDB)
1aq1  
  Conformer 2
(PDB)
1qmz (A)
  Window Length 7
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 247 1.91   4 - 34   59 - 70   77 - 293
2 22 2.15   35 - 58   71 - 76

Sequence


           _________________________________34______________________58__________70____76___________________________________________ 
 1aq1    : *MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKI--------vPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 
         :                                                                                                                          
 1qmz(A) : SMENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCH 
           _________________________________34______________________58__________70____76___________________________________________ 

           ________________________________________________________________________________________________________________________ 
 1aq1    : SHRVLHRDLKPQNLLINTEGAIKLADFGL------------eVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 
         :                                                                                                                          
 1qmz(A) : SHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYhEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF 
           ________________________________________________________________________________________________________________________ 

           __________________________________________________________                                                               
 1aq1    : PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHLRL                                                               
         :                                                                                                                          
 1qmz(A) : PKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKPVPHL**                                                               
           __________________________________________________________                                                               

Morph

Morph animation in progress.
Status: Initialising

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
29.9
Translation
(A)
0.4
Closure
(%)
53.7
Bending Residues
( green )
  34 - 46
  58 - 59
  70 - 71
  76 - 77
Bending Region Analysis

Dynamic Contact Graph

The dynamic contact graph is still being generated. Progress: Initialising

PyMOL Script

Download and extract PyMOL PML script file Download