3-Dehydroquinate Synthase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 3-Dehydroquinate Synthase
  Conformer 1
(PDB)
1nr5 (A)
  Conformer 2
(PDB)
1nua (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 191 0.93   185 - 230   232 - 248   255 - 390
2 187 0.58   5 - 184   231 - 231   249 - 254

Sequence


           ________________________________________________________________________________________________________________________ 
 1nr5(A) : NPTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTG 
         :                                                                                                                          
 1nua(A) : NPTKISILGRESIIADFGLWRNYVAKDLISDCSSTTYVLVTDTNIGSIYTPSFEEAFRKRAAEITPSPRLLIYNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTVVIALGGGVIGDLTG 
           ________________________________________________________________________________________________________________________ 

           ___________________________________________________________184___________________________________________230____________ 
 1nr5(A) : FVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKAR 
         :                                                                                                                          
 1nua(A) : FVASTYMRGVRYVQVPTTLLAMVDSSIGGKTAIDTPLGKNLIGAIWQPTKIYIDLEFLETLPVREFINGMAEVIKTAAISSEEEFTALEENAETILKAVRREVTPGEHRFEGTEEILKAR 
           ___________________________________________________________184___________________________________________230____________ 

           ___248__________________________________________________________________________________________________________________ 
 1nr5(A) : ILASARHKAYVVSADEREGGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALDKKNDGPK 
         :                                                                                                                          
 1nua(A) : ILASARHKAYVVSA----gGLRNLLNWGHSIGHAIEAILTPQILHGECVAIGMVKEAELARHLGILKGVAVSRIVKCLAAYGLPTSLKDARIRKLTAGKHCSVDQLMFNMALD----gPK 
           ___248__________________________________________________________________________________________________________________ 

           ______________________________                                                                                           
 1nr5(A) : KKIVLLSAIGTPYETRASVVANEDIRVVLA                                                                                           
         :                                                                                                                          
 1nua(A) : KKIVLLSAIGTPYETRASVVANEDIRVVLA                                                                                           
           ______________________________                                                                                           

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
For more advanced options, right click on the model.


Show console


play backwards pause play forwards

Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
12.6
Translation
(A)
-0.6
Closure
(%)
99.3
Bending Residues
( green )
  184 - 185
  230 - 232
  248 - 255
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Hinge

PyMOL Script

Download and extract PyMOL PML script file Download