1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase

(All numbering and residues are taken from first PDB file)

Run Details Domains Sequence Morph Domain Pairs Contact Graph

DynDom run details

  Property   Value
  Name 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
  Conformer 1
(PDB)
1q0q (A)
  Conformer 2
(PDB)
1jvs (A)
  Window Length 5
  Minimum ratio 1.0
  Minimum domain size 20

Domains

Domain Size Backbone RMSD
(A)
Residues
1 129 0.75   24 - 26   130 - 133   150 - 185   229 - 274   285 - 291   293 - 293   297 - 326   377 - 381
2 146 0.52   3 - 23   27 - 129   134 - 149   275 - 283   292 - 292   294 - 296
3 101 0.67   186 - 228   327 - 376   382 - 396

Sequence


           _____________________23_26______________________________________________________________________________________________ 
 1q0q(A) : MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTI 
         :                                                                                                                          
 1jvs(A) : GKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTR-vEQCLEFSPRYAV-dDEASAKLLKT-lQQQGSRTEVLSGQQAACD-aALEDVDQV-aAIVGAAGLLPTLAAIRAGKTI 
           _____________________22_25______________________________________________________________________________________________ 

           __125_____133_____________149_________________________________185________________________________________228____________ 
 1q0q(A) : LLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFN 
         :                                                                                                                          
 1jvs(A) : LLANKESLVTCGRLF-dAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLAT-tPDQACRHPNWS-gRKISVDSAT--nKGLEYIEARWLFN 
           __124_____132_____________148_________________________________184________________________________________227____________ 

           _______________________________274______283_____291__296_________________________324____________________________________ 
 1q0q(A) : ASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
         :                                                                                                                          
 1jvs(A) : ASASQ-eVLIHPQSVIHS-vRYQDGSVLAQLGEPD-rTPIAHT-aWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLA-eAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAALN 
           _______________________________273______282_____290__295_________________________323____________________________________ 

           ___________374____381___________________                                                                                 
 1q0q(A) : LSVLEKMDMREPQCVDDVLSVDANAREVARKEVMRLAS**                                                                                 
         :                                                                                                                          
 1jvs(A) : LSVLEK-d-rEPQCVDDVLSVDANAREVARKEV-rLASSA                                                                                 
           ___________373____380___________________                                                                                 

Morph

This morph was created using the MorphIt_Pro protein morphing technique.
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Domain Pairs

Property Value
Fixed Domain
( blue )
1
Moving Domain
( red )
2
Rotation Angle
(deg)
9.1
Translation
(A)
0.0
Closure
(%)
99.8
Bending Residues
( green )
  23 - 24
  26 - 27
  125 - 130
  133 - 137
  149 - 150
  274 - 275
  283 - 285
  291 - 294
  296 - 297
Bending Region Analysis
Property Value
Fixed Domain
( blue )
1
Moving Domain
( yellow )
3
Rotation Angle
(deg)
10.4
Translation
(A)
0.5
Closure
(%)
62.2
Bending Residues
( green )
  185 - 187
  228 - 229
  324 - 327
  374 - 378
  381 - 382
Bending Region Analysis

Dynamic Contact Graph

Conformer 1 Contact:
Residue 1 ———› Residue 2

Conformer 2 Contact:
Residue 2 ———› Residue 1

Movement classification: Shear

Conformer 1 Contact:
Residue 1 ———› Residue 3

Conformer 2 Contact:
Residue 3 ———› Residue 1

Movement classification: Shear

PyMOL Script

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